Subcommands15 subcommands
nextflow clean
Clean up project cache and work directories (Default: last run)
nextflow clone
Clone a project into a folder
nextflow config
Print a project configuration
nextflow console
Launch Nextflow interactive console
nextflow drop
Delete the local copy of a project
nextflow help
Print the usage help for a command
nextflow info
Print project and system runtime information
nextflow kuberun
Execute a workflow in a Kubernetes cluster (experimental)
nextflow list
List all downloaded projects
nextflow log
Print executions log and runtime info
nextflow pull
Download or update a project
nextflow run
Execute a pipeline project
nextflow secrets
Handle and manage sensitive information for pipeline execution in a safe manner
nextflow self-update
Update nextflow runtime to the latest available version
nextflow view
View project script file(s)
OptionsOn nextflow itself
-C
Use the specified configuration file(s) overriding any defaults <configuration file>
-D
Set JVM properties <custom Java system property>
-bg
Execute nextflow in background
-c-config
Add the specified file to configuration set <configuration file>
-d-dockerize
Launch nextflow via Docker (experimental)
-log
Set nextflow log file path
-q-quiet
Do not print information messages
-syslog
Send logs to syslog server (eg. localhost:514)
-v-version
Print the program version
