Snakemake

snakemake

Runs as snakemake|Linux|snakemake.github.io

Open form in Otty otty.toml

What the manifest covers

3 sections, each its own tab

Command form

ai-draft · 3 tasks · 14 fields

otty gui snakemake opens Run a workflow and fills your prompt with the command.

Autocomplete

generated · 2.3 KB

Subcommands, options and argument candidates Otty offers as you type.

Dotfiles

1 path

Where it keeps its config, which parts are credentials, and which lines belong to one machine.

Published manifest

Immutable: every revision keeps its URL and its digest

Version window

All versions

Revision

8c10139112a473b07175fc6452ffa4bdde15d5beeffd47a60ed6fb8573d47411

Read it

otty.toml · JSON · API metadata

SourcesEvery field cites one of these

snakemake-man

usage: snakemake [-h] [--snakefile FILE] [--cores [N]] [--configfile FILE] [--directory DIR] [--dryrun] [--printshellcmds] [--keep-going] [--forceall] [--reason] [--unlock] [--rerun-incomplete] [target [target ...]] --snakefile FILE, -s FILE --cores [N], --jobs [N], -j [N] Use at most N cores in parallel (default: 1). --configfile FILE…

manualDebian snakemake(1)

manpages.debian.org