Snakemake

snakemake

Runs as snakemake|Linux|snakemake.github.io

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Generated from the command form · 13 options

Published once and never changed; check the digest before caching

sha256

d8ca46d662a1c3a32aedec2f3157bc89467d12d0e9d787bd1fafb993148bf52b

Size

2346 bytes

OptionsOn snakemake itself

--cores-j

Maximum cores in parallel. <cores>

--snakefile-s

Snakefile <snakefile>

--configfile

Config file <configfile>

--directory-d

Working directory <directory>

--dryrun-n

Dry run

--printshellcmds-p

Print shell commands

--reason-r

Print reason for each job

--keep-going-k

Keep going after failures

--forceall-F

Force re-run of all dependencies

--rerun-incomplete--ri

Re-run incomplete jobs

--unlock

Remove working directory lock

--list-l

List rules

--dag

Print the job DAG (dot)

ArgumentsPositional, in order

<targets>

Rules or files to build. Empty builds the first rule. · optional · repeatable