SRA Toolkit

sratoolkit

A toolkit for using data in the INSDC Sequence Read Archives.

Runs as prefetch, fasterq-dump, vdb-config|macOS, Linux, Windows|github.com

Open form in Otty otty.toml

What the manifest covers

3 sections, each its own tab

Command form

ai-draft · 2 tasks · 3 fields

otty gui sratoolkit opens Download SRA accessions (prefetch) and fills your prompt with the command.

Autocomplete

generated · 1.3 KB

Subcommands, options and argument candidates Otty offers as you type.

Dotfiles

1 path

Where it keeps its config, which parts are credentials, and which lines belong to one machine.

Published manifest

Immutable: every revision keeps its URL and its digest

Version window

All versions

Revision

0195f948076ef32c555487e3433be59336941c3a9674340514f85f008f1370cc

Read it

otty.toml · JSON · API metadata

SourcesEvery field cites one of these

wiki

$prefetch SRR000001 -O /path/to/be/used Make sure the last directory of /path/to/be/used is the accession itself. $prefetch SRR1951777 --max-size 420000000000 kilobytes (default): --max-size 10 == --max-size 10k : 10 kilobytes, megabytes: --max-size 10m : 10 megabytes, gigabytes: --max-size 10g : 10 gigabytes, terabytes: --max-size 10t : 10 terabytes, unlimi…

manual2026-10-27

github.com