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SRA Toolkit

sratoolkit

A toolkit for using data in the INSDC Sequence Read Archives.

Runs as prefetch, fasterq-dump, vdb-config|macOS, Linux, Windows|github.com
Open form in Otty otty.toml

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Generated from the command form · 2 options
Published once and never changed; check the digest before caching
Download JSON
sha256
5cf96dc6f5b475c60057dd0e1080c4647b321bd967fe8361321a82049281de9b
Size
1291 bytes
OptionsOn prefetch itself
-O
The last directory should be named after the accession. <output_dir>
--max-size
Default limit is 20G. Suffixes k, m, g, t; u means unlimited. <max_size>
ArgumentsPositional, in order
<accessions>
SRA run accessions such as SRR000001. · repeatable